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Originally published as JCO Early Release 10.1200/JCO.2006.06.2984 on August 14 2006

Journal of Clinical Oncology, Vol 24, No 26 (September 10), 2006: pp. 4340-4346
© 2006 American Society of Clinical Oncology.

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Somatic Activation of KIT in Distinct Subtypes of Melanoma

John A. Curtin, Klaus Busam, Daniel Pinkel, Boris C. Bastian

From the Comprehensive Cancer Center; Departments of Laboratory Medicine, Dermatology, and Pathology, University of California, San Francisco, San Francisco, CA; and the Department of Pathology, Memorial Sloan-Kettering Cancer Center, New York, NY

Address reprint requests to Boris C. Bastian, MD, UCSF Cancer Center, Box 0808, San Francisco, CA 94143-0808; e-mail: bastian{at}cc.ucsf.edu

Purpose: Melanomas on mucosal membranes, acral skin (soles, palms, and nail bed), and skin with chronic sun-induced damage have infrequent mutations in BRAF and NRAS, genes within the mitogen-activated protein (MAP) kinase pathway commonly mutated in melanomas on intermittently sun-exposed skin. This raises the question of whether other aberrations are occurring in the MAP kinase cascade in the melanoma types with infrequent mutations of BRAF and NRAS.

Patients and Methods: We analyzed array comparative genomic hybridization data from 102 primary melanomas (38 from mucosa, 28 from acral skin, and 18 from skin with and 18 from skin without chronic sun-induced damage) for DNA copy number aberrations specific to melanoma subtypes where mutations in BRAF and NRAS are infrequent. A narrow amplification on 4q12 was found, and candidate genes within it were analyzed.

Results: Oncogenic mutations in KIT were found in three of seven tumors with amplifications. Examination of all 102 primary melanomas found mutations and/or copy number increases of KIT in 39% of mucosal, 36% of acral, and 28% of melanomas on chronically sun-damaged skin, but not in any (0%) melanomas on skin without chronic sun damage. Seventy-nine percent of tumors with mutations and 53% of tumors with multiple copies of KIT demonstrated increased KIT protein levels.

Conclusion: KIT is an important oncogene in melanoma. Because the majority of the KIT mutations we found in melanoma also occur in imatinib-responsive cancers of other types, imatinib may offer an immediate therapeutic benefit for a significant proportion of the global melanoma burden.

published online ahead of print at www.jco.org on August 14, 2006.

Suported in part by National Cancer Institute Grants No. R33 CA95300, R01 CA094963, and PO1 CA025874-25-A1.

Presented in part at a National Institutes of Health Resources for Melanoma Research workshop that was not open to the public; and the 97th Annual Meeting of the American Association of Cancer Research, Washington, DC, April 1-5, 2006.

Terms in blue are defined in the glossary, found at the end of this article and online at www.jco.org.

Authors' disclosures of potential conflicts of interest and author contributions are found at the end of this article.


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    Jürgen C. Becker, Eva B. Bröcker, Dirk Schadendorf, and Selma Ugurel
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