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© 1999 American Society for Clinical Oncology Prognostic Value of p53 Genetic Changes in Colorectal CancerFrom the Departments of Surgery and Oncology, University Hospital, Uppsala; Pharmacia Biotech AB, Uppsala; and Department of Surgery, Umeå University Hospital, Umeå, Sweden. Address reprint requests to Ulf Kressner, MD, PhD, Department of Surgery, Uddevalla sjukhus, 451 80 Uddevalla, Sweden; email ulf.kressner{at}nu.alvsborg.se
PURPOSE: To explore whether there is a linkage between different mutations in the p53 gene in primary colorectal cancer and the risk of death from colorectal cancer in a large group of patients with long follow-up. We also compared a complementary DNA-based sequencing method and an immunohistochemical (IHC) method for detecting p53 protein overexpression in colorectal cancer. MATERIALS AND METHODS: The entire coding region of the p53 gene was sequenced in 191 frozen tumor samples collected from January 1988 to November 1992. RNA was extracted and synthesized to cDNA. p53 was amplified by the polymerase chain reaction, and the DO-7 monoclonal antibody was used in the IHC assessments. RESULTS: Mutations were detected in 99 samples (52%) from 189 patients. There was a significant relationship between the p53 mutational status and the cancer-specific survival time, with shorter survival time for patients who had p53 mutations than for those who did not (P = .01, log-rank test). Mutations outside the evolutionarily conserved regions were associated with the worst prognosis. Multivariate analysis showed that the presence of p53 mutations was an independent prognostic factor (relative hazard, 1.7, P = .03). There was no significant relationship between overexpression of p53 protein, as determined by IHC analysis, and cancer-specific survival. CONCLUSION: Mutational analyses of the p53 gene, using cDNA sequencing in colorectal cancer, provide useful prognostic information. In addition, cDNA sequencing gives better prognostic information than IHC assessment of p53 protein overexpression.
THE DUKES CLASSIFICATION SYSTEM and similar systems based on the extent of tumor spread (eg, Astler-Coller and the tumor-node-metastasis classification) represent the most commonly used staging procedures in colorectal cancer.1,2 The tumor stage provides prognostic information but not to the extent that it can be used to meet current requirements for differentiated therapy. The toxicity and expense of additional therapy can only be justified in the subset of patients at high risk for relapse. A large number of potentially clinically useful prognostic factors have been identified,3 among them, mutational status of the p53 gene. The p53 suppressor gene, located on the short arm of chromosome 17,4 encodes a 53-kd nuclear phosphoprotein that regulates the cell cycle.5,6 Mutations in this gene constitute some of the most frequently occuring genetic changes found in human malignancies.4,5 They are thought to be a late development in the adenoma-carcinoma sequence in colorectal cancer.7 It has been reported that p53 mutations seem to be associated with poor prognosis in colorectal cancer.8-11 However, conflicting results have also been claimed.12 Overexpression of the p53 protein is detectable in 30% to 70% of the tumors, using immunohistochemical (IHC) methods. In a great majority of studies, p53 protein overexpression has been used as a surrogate marker for p53 mutations, an assumption that is not entirely correct,13 although it may sometimes be justified for practical and economic reasons. In some studies,14-17 p53 protein overexpression has been shown to correlate with patient survival, a finding that has not been observed in other studies.10,18-22 The purpose of this study was to explore and to determine whether there is a valid association between the mutations in the p53 gene, as determined by cDNA sequencing, and the risk of death from colorectal cancer, as studied in a large group of patients with long follow-up. In addition, we investigated the relationship between observed mutations in the p53 gene and the overexpression of the p53 protein, as detected by IHC analysis. We also evaluated whether there is any association between cDNA sequencing and serum p53 antibody levels in preoperative serum samples.
Patients Tumor samples were collected from 194 nonselected patients resected for colorectal cancer in the Uppsala and Falun counties in Sweden between January 1988 and November 1992. One hundred ninety-one meticulously dissected, fresh-frozen samples were available for analyses. Two patients contributed samples from two different tumors. Subsequently, one tumor sample from each patient was included in the survival analyses. Serum samples were collected before surgery from 90 patients (47%). The age and sex distribution, Dukes stage, and tumor differentiation are listed in Table 1. One hundred sixty-seven patients (87%) were resected for cure. In the remaining 24 patients, distant metastases were detected during surgery; consequently, these patients underwent a palliative resection. This group was classified as Dukes stage D. Twenty-eight of the patients (43%) with rectal cancer received preoperative radiotherapy. No patient received any postoperative adjuvant radiotherapy or chemotherapy. At follow-up in January 1997, 74 patients (39%) had died from cancer or from other causes with known tumor burden. Twenty-eight patients (15%) died from other causes without any indication of tumor relapse. No patient was lost to follow-up. The median survival time of the 89 patients alive at follow-up was 87 months (range, 51 to 106 months). Routine biopsy samples were taken from each tumor for histopathologic classification. The tumors were graded according to the World Health Organization classification23 and staged according to the Dukes classification system.1
Sequence-Based Analyses of p53 cDNA sequencing was performed essentially as described by Sjögren et al,13 with some minor modifications of polymerase chain reaction (PCR) primers, fluorescent label, and analysis platform. RNA was prepared from the frozen tumor samples, under stringent conditions, to avoid degradation and contamination. This procedure was followed by an enzymatic synthesis of cDNA, using RNA as template. p53 was amplified from the tumor cDNA by PCR, using four overlapping primer pairs covering the entire coding region of the p53 gene. With one of the primers (in each primer pair) modified with a biotin molecule, biotin-labeled PCR products were generated, thus facilitating solid sequencing.24 Manifold (solid-phase) sequencing was performed essentially as described by Lagerkvist et al.25 The sequencing products generated were analyzed using an automated laser fluorescence sequencer (ALFexpress; Pharmacia Biotech, Uppsala, Sweden). The sequence was finally compared with the wild-type p53 sequence, using prototype software program p53 SB Decipher, version 1.00 (Pharmacia Biotech). Nucleotide changes that had an impact on the protein were considered to be mutations. Each identified mutation was verified by sequencing an entirely new PCR product from the corresponding cDNA. Further confirmation was obtained by analysis of the neighboring PCR fragment when the mutation was located in an overlapping segment.
IHC Analysis of Overexpression of p53 Protein
Analysis of Serum p53 Antibody Levels
Statistical Analyses
Changes in p53 The p53 mutational status for 189 colorectal cancers out of 191 was determined by cDNA sequencing. From the remaining two samples, no PCR products were generated. Mutations were detected in 99 samples (52%) from 189 patients. One hundred seven genetic changes were found (84 missense mutations, 16 deletions, three insertions, and four stops). Eight samples displayed two different mutations (five tumors had two missense mutations, one tumor had one deletion and one insertion, one tumor had two deletions, and one tumor had an insertion and one missense mutation). p53 mutations were found throughout the entire protein coding region of the gene. Seventy-nine (74%) of the 107 mutations were located in the conserved regions of p53 (Fig 1). Most of the missense mutations (83%) occurred inside conserved regions, whereas other genetic changes more frequently occurred outside. There was no difference in the frequency of mutations within the Dukes stages (Table 1). Tumors in the distal colon and rectum contained more frequent mutations than tumors in the proximal colon.
Comparison of p53 cDNA Sequencing and p53 IHC Analysis
Twenty-eight (29%) of the tumors that were positive by cDNA sequencing were negative on IHC analysis. This discrepancy was observed in three (75%) of four tumors with mutations that created premature stop codons and in nine (64%) of 14 tumors with deletions, but was much more uncommon in tumors with missense mutations (15 of 84, 18%). Twenty (22%) of the tumors that displayed the wild-type gene on cDNA sequencing were positive by IHC analysis (Table 2).
p53 Mutations and Serum p53 Antibody Levels
p53 Mutations and Prognosis
Overexpression of p53 Protein and Prognosis
Uni- and Multivariate Analyses
Age, sex, p53 mutation, Dukes stage, and tumor differentiation were independent prognostic factors in a multivariate analysis using the Cox proportional hazards model, whereas overexpression of p53 protein and tumor localization were not (Table 4). Furthermore, no prognostic information was obtained from overexpression of p53 protein when tested in a multivariate model (data not shown).
Our results show that determination of p53 mutations using cDNA sequencing in colorectal cancer provides independent prognostic information about colorectal cancerrelated deaths. This finding is in accordance with the findings of Hamelin et al,8 who also evaluated p53 mutational status in a multivariate model. In two other studies,9,11 a correlation between p53 mutations and patient survival, using Kaplan-Meier life table analyses, was also observed. The majority of published studies focusing on p53 gene status and prognosis in colorectal cancer have been based solely on IHC analyses. Some studies have then shown a correlation with survival14-17; this finding could not, however, be confirmed by us23 or by others.10,18-20,22 Our results suggest that the choice of methodology could have influenced the outcome of the studies and thus the overall clinical significance of p53 mutations. Direct comparisons among different IHC studies are difficult. Different mono- and polyclonal antibodies, plus both fresh tissue samples and archival material, have been used. Moreover, there is a lack of consensus as to how to interpret nuclear staining, ie, the number of cells that need to be stained for a tumor to be considered positive for p53 overexpression. In addition, our present results show that cDNA sequencing gives better prognostic information than IHC assessment of the p53 protein (relative hazard [RH], 1.63, P = 0.04; v RH, 1.02, P = .72), in agreement with results previously reported for breast cancer.13 We are the first to report that mutations that occur outside evolutionary conserved regions seem to be related to a significantly poorer prognosis (RH, 2.23, P = .01). This finding is in contrast to that of Goh et al,9 who stated that missense mutations within conserved regions were associated with the worst prognosis. In that study, however, only exons 4 to 9 in the p53 gene were studied and not the entire p53 gene, as was the case in our study. Mutations in the p53 gene occur predominantly in the segment of the genome that is responsible for DNA binding.30 This genomic region, coded mostly by exons 5 to 8, is referred to as the evolutionary conserved domain,31 in which evolutionary conserved regions are located. We found that the frequency of missense mutations was higher inside the conserved regions (82%), which was in agreement with other reports,9,11 whereas other types of mutations seemed to be more widely distributed. The concordance between the cDNA sequencing and IHC analysis in our material was only 74%. Although the correlation is highly statistically significant (P < .001), it indicates that the two methods have partly different sensitivity for detecting aberrant p53. The samples used for IHC analysis and cDNA sequencing were selected from each tumor and located adjacent to each other. Normal intestine was always excluded from the samples, but microdissection was not performed. The possible impact of intratumoral connective tissue was considered negligible, as the tumor tissue always dominates intratumoral stroma demonstrated by IHC analyses. Similar results have been reported in studies comparing p53 mutations and overexpression of p53 protein with polyclonal antibody 180111,32 or with monoclonal antibody DO-7.33 As most genetic changes other than missense mutations do not result in the expression of any p53 protein, it is therefore natural that these genetic changes more frequently fail detection by the IHC method than by cDNA sequencing. This failure indicates a weakness of the IHC method to find these types of mutations, which represent 20% of all mutations in colorectal cancer.8 In contrast, the IHC method was relatively effective in identifying missense mutations (81%), which may be due to the fact that these mutations result in excessive p53 protein expression not sufficiently counterbalanced by Mdm2.34,35 The cDNA sequencing method used in this study has previously been used for the detection of p53 changes in breast cancer.13 We have had no indication that the method generated false-positive results. It could theoretically be the case as a consequence of contamination of the samples. Stringent procedures during the pre-PCR phase of the analysis, in combination with appropriate negative controls, reduced to a minimum the risk of obtaining false-positive results. Baas et al36 showed that strong rather than weak IHC staining is associated to a great extent with p53 genetic changes detected by gene analyses. Twenty tumors with no detectable p53 changes were positive according to IHC analysis, thus possibly indicating an overexpression of the p53 protein without genetic changes. In theory, this may be caused by an inability to detect certain mutations. However, cDNA sequencing is a very sensitive method, and the frequency of missed mutations is extremely low.13 The theory of stabilization of the p53 protein is more likely, possibly involving a nonmutational pathway responsible for the overexpression of wild-type p53 protein.37 False-negative results can occur putatively, if tumor samples used for the analyses contain a low proportion of tumor cells in relation to normal cells. As a result, false-negative results dilute the signal corresponding to mutation below the threshold of detection of cDNA sequencing. The biopsy specimens selected for this study were carefully chosen to contain abundant tumor cells, which can explain the strong signal seen in virtually all biopsy specimens. In this study, we were also able to demonstrate a significant association between p53 genetic changes in tumor sections, as determined by cDNA sequencing, and elevated levels of serum p53 antibodies (P = .0002), although increased levels were seen in only 50% of the patients with p53 mutations. Missense mutations were more commonly associated with high serum p53 antibody levels (71%). A missense mutation results in an accumulation of mutant p53 protein, and this seems to be necessary for the development of a humoral response with detectable levels of anti-p53 antibodies in the peripheral circulation. Fluorouracil is a cell cyclespecific cytotoxic agent used in colorectal cancer that induces DNA damage, both by inhibition of thymidylate synthase and by direct fragmentation of DNA. The tumor cell may respond to DNA damage by undergoing G1 arrest or by inducing cell death by apoptosis. This response may rely on a normal p53 gene and a functional p53 protein.38 Thus, it seems that normal p53 protein is essential for optimal cytotoxic drug action. Lowe et al39 have shown that the status of the p53 gene may play an important role in the responsiveness to treatment with cytotoxic drugs. This also seems to be the case for radiotherapy.40 No patients in our series received adjuvant chemotherapy treatment, which has now become routine in clinical practice for Dukes stage C patients. Whereas normal p53 protein facilitates apoptosis induced by chemotherapy, p53 mutation instead leads to chemotherapy resistance38 and thus to overtreatment in a large number of patients. Detecting genetic changes in the p53 gene with cDNA sequencing is technically demanding. It is likely that methods as accurate as cDNA sequencing but requiring fewer technical skills will be used for routine screening of p53 gene mutations. Such a method has recently been described.41 Using this method, identification of wild-type samples would only require cDNA sequencing of aberrant samples. This kind of strategy would significantly reduce the amount of work needed to establish the relationship between genotype and phenotype in a clinical context. In essence, p53 cDNA sequencing in colorectal cancer provides an accurate and sensitive method for localization of genetic changes. Our observations demonstrate that cDNA sequencing is superior to IHC analysis in this respect. However, if p53 cDNA sequencing or any other method is to have an impact on clinical practice in the determination of treatment, it must also be possible to analyze preoperative tumor biopsy specimens more efficiently. The question of tumor heterogeneity in relation to biopsy sampling26 will need further attention before cDNA sequencing can be used routinely.
Supported by grants from the Swedish Cancer Society (grant no. 1921-B97-15XCC), the University Hospital Cancer Foundation, and Pharmacia Biotech, Uppsala The skillful technical assistance of Fariba Sabounchi is gratefully acknowledged.
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Copyright © 1999 by the American Society of Clinical Oncology, Online ISSN: 1527-7755. Print ISSN: 0732-183X
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