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Journal of Clinical Oncology, Vol 20, Issue 14 (July), 2002: 3095-3105
© 2002 American Society for Clinical Oncology

Evaluation of HER-2/neu Gene Amplification and Overexpression: Comparison of Frequently Used Assay Methods in a Molecularly Characterized Cohort of Breast Cancer Specimens

By Michael F. Press, Dennis J. Slamon, Kerry J. Flom, Jinha Park, Jian-Yuan Zhou, Leslie Bernstein

From the Breast Cancer Research Program of the Lee Breast Center, Department of Pathology and Department of Preventive Medicine, Norris Comprehensive Cancer Center, University of Southern California; Division of Hematology and Oncology, University of California Los Angeles School of Medicine, Los Angeles, CA; and Vysis, Inc, Downers Grove, IL.

Address reprint requests to: Michael F. Press, MD, PhD, Norris Topping Tower Room 5409, 1441 Eastlake Ave, U.S.C./Norris Comprehensive Cancer Center, Los Angeles, CA 90033; email: press@ hsc.usc.edu.


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
PURPOSE: To compare and evaluate HER-2/neu clinical assay methods.

MATERIALS AND METHODS: One hundred seventeen breast cancer specimens with known HER-2/neu amplification and overexpression status were assayed with four different immunohistochemical assays and two different fluorescence in situ hybridization (FISH) assays.

RESULTS: The accuracy of the FISH assays for HER-2/neu gene amplification was high, 97.4% for the Vysis PathVision assay (Vysis, Inc, Downers Grove, IL) and 95.7% for the the Ventana INFORM assay (Ventana, Medical Systems, Inc, Tucson, AZ). The immunohistochemical assay with the highest accuracy for HER-2/neu overexpression was obtained with R60 polyclonal antibody (96.6%), followed by immunohistochemical assays performed with 10H8 monoclonal antibody (95.7%), the Ventana CB11 monoclonal antibody (89.7%), and the DAKO HercepTest (88.9%; Dako, Corp, Carpinteria, CA). Only the sensitivities, and therefore, overall accuracy, of the DAKO Herceptest and Ventana CB11 immunohistochemical assays were significantly different from the more sensitive FISH assay.

CONCLUSION: Based on these findings, the FISH assays were highly accurate, with immunohistochemical assays performed with R60 and 10H8 nearly as accurate. The DAKO HercepTest and the Ventana CB11 immunohistochemical assay were statistically significantly different from the Vysis FISH assay in evaluating these previously molecularly characterized breast cancer specimens.


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
A LARGE NUMBER of molecular genetic alterations have now been identified in human breast cancers. These include both inherited and acquired genetic alterations. Among acquired alterations HER-2/neu gene amplification has received a great deal of attention recently. This is because of its potential clinical utility as a prognostic marker and as a predictor of responsiveness to treatment.

HER-2/neu (c-erbB-2) gene amplification, identified in 20% to 30% of breast cancers, is a prognostic marker of poor clinical outcome in node-negative and node-positive breast cancer and a predictor of lack of responsiveness to tamoxifen antiestrogen therapy and responsiveness to adjuvant doxorubicin chemotherapy. The development of an immunotherapeutic, trastuzamab (Herceptin; Genentech, Inc, South San Francisco, CA), to the extracellular domain of HER-2/neu has provided a new treatment for women with metastatic, HER-2/neu-overexpressing breast cancer. The importance of HER-2/neu in breast cancer treatment decision making has focused attention on the ability of various clinical assays to correctly assign HER-2/neu amplification and overexpression status.

One of us (D.J.S.) first identified HER-2/neu gene amplification in breast cancers 15 years ago using Southern hybridization of frozen breast cancer specimens.1 Subsequently, we have shown a correlation between gene amplification and an increased level of HER-2/neu expression, referred to as overexpression, at the mRNA and protein product levels.2 Overexpression of HER-2/neu in cultured cells and transgenic mice is associated with malignant transformation in the cells overexpressing this gene.3-5 Although initially controversial, we and others have shown that HER-2/neu gene amplification or overexpression predicts shorter disease-free survival or shorter overall survival in both axillary lymph node–negative6-17 and node-positive breast cancer.1,2,8,18,19 In addition, HER-2/neu overexpression has been associated with responsiveness to cytotoxic chemotherapy12,20-25 and resistance to tamoxifen antiestrogen therapy.26-29 Experimental work with animal models and clinical trials with women having HER-2/neu-overexpressing breast cancer have shown tumor regression in response to anti–HER-2/neu antibody therapy. Recently, the United States Food and Drug Administration (FDA) approved an immunotherapeutic agent for women with metastatic, HER-2/neu-overexpressing breast cancers. This immunotherapeutic is a recombinant, humanized anti–HER-2/neu monoclonal antibody, trastuzamab. The FDA has also approved two fluorescence in situ hybridization (FISH) assays for clinical testing of HER-2/neu gene amplification (Ventana Medical Systems, Inc, Tucson, Az, and Vysis, Inc, Downers Grove, IL) and two immunohistochemical assays for HER-2/neu overexpression (DAKO, Corp, Carpinteria, CA, and Ventana Medical Systems, Inc). The FDA approval for gene amplification tests was originally for identification of women with node-negative disease at high-risk for recurrence or disease-related death or for selection to doxorubicin chemotherapy. A recently approved application to the FDA broadened the indications for FISH testing to include selection of women with metastatic breast cancer for trastuzamab therapy. Both immunohistochemistry assays are approved for selection of women with metastatic breast cancer to receive trastuzamab treatment.

Previous molecular analyses of frozen breast cancer specimens indicate that amplification is closely associated with overexpression;2,18 however, the detection rates for immunohistochemistry reported by clinical laboratories are different from one another and, for at least one of the immunohistochemical assays, higher than expected.30,31 This apparent discrepancy has generated considerable confusion among clinicians, pathologists, and patients regarding appropriate methods for HER-2/neu testing. To address this issue, we have used each of the four FDA-approved assays and two additional immunohistochemical assays to test for HER-2/neu alterations in breast cancer specimens in which we previously determined amplification and overexpression levels using solid matrix blotting techniques.


    MATERIALS AND METHODS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
Breast Cancer Specimens
Breast cancer specimens were selected for inclusion in this study based on the following criteria: (1) specimens were previously molecularly characterized for HER-2/neu gene amplification and overexpression using solid matrix blotting techniques,2,6,18,32 and (2) the analyses of amplification and expression showed agreement between amplification status and expression status. To minimize inclusion of tumors that were misclassified because of dilutional artifacts associated with solid matrix blotting methods, samples selected as representative of gene amplification were required to show both amplification and overexpression, whereas cases selected as representative of nonamplified samples were required to show neither gene amplification nor overexpression by solid matrix blotting techniques. Tumors showing a disagreement between the amplification and expression status were excluded from the analysis.

HER-2/neu gene amplification was previously determined by solid matrix blotting (either Southern hybridization or slot/dot blot hybridization) using DNA extracted from breast cancer specimens.2,11 HER-2/neu expression was assessed by either solid matrix blotting of RNA or protein extracted from breast cancer specimens (Northern hybridization, dot blot hybridization, and Western immunoblot) or immunohistochemistry. If expression was assessed by more than one method, then the expression level was assigned according to the classification determined by the majority of assay methods. Ninety-eight cases had expression data available from two or more assay methods.2,18 The remaining 19 cases had expression data available from only a single assay method.6

Breast cancer specimens with known HER-2/neu gene copy and expression levels were evaluated in this study as archival, paraffin-embedded tissue specimens. The specimens were arrayed in two paraffin-embedded, multitumor specimen blocks, as described elsewhere in detail.32 The histopathology of all specimens remaining in the multispecimen blocks was reviewed, and only specimens containing breast carcinoma cells were included in the study. One hundred seventeen cases met all of the above criteria and were included in this study with 43 breast cancers showing both amplification and overexpression and 74 breast cancers showing neither amplification nor overexpression. The multitumor specimen block approach permitted the use of small quantities of reagents and, more importantly, assured equal exposure of each breast cancer to all of the reagents in the assay system.

FISH for Gene Amplification Using Both HER-2/neu and Chromosome 17 Centromere Probes
HER-2/neu gene copy level was determined by FISH in paraffin-embedded tissue sections as a ratio of HER-2/neu gene copies-to-chromosome 17 centromere copies (Vysis, Inc). This approach eliminates increased gene copy number due to aneuploidy or aneusomy alone. Because the HER-2/neu gene is located on chromosome 17,33 an alpha satellite (pericentromeric) DNA probe for chromosome 17 was selected as an internal control for chromosomal aneuploidy. By comparing the number of copies of these two chromosomal markers, aneuploidy of chromosome 17 is excluded as a source of increased HER-2/neu gene copy number. The alpha-satellite DNA is also used as an internal control to correct for differences that might arise as a result of tissue sectioning artifacts in paraffin-embedded section preparation.

FISH was performed according to the PathVysion (Vysis, Inc) protocol, which is described in the package insert as approved by the United States FDA. In brief, the PathVysion protocol involved rehydration of paraffin-embedded, 4-µm thick, multitumor tissue sections through Hemo-De clearing agent (Vysis, Inc) and a graded series of alcohols. The sections were air dried, pretreated (80°C, 30 minutes), and digested with protease (37°C, 10 to 20 minutes) before hybridizing with fluorescent-labeled probes for HER-2/neu gene and alpha-satellite DNA for chromosome 17. The locus specific identifier (LSI) HER-2/neu DNA probe is a 190-Kb SpectrumOrange (Abbott-Vysis, Inc) directly labeled fluorescent DNA probe specific for the HER-2/neu gene locus (17q11.2-ql2). The chromosome enumeration probe (CEP) 17 DNA probe is a 5.4-Kb SpectrumGreen (Abbott-Vysis, Inc) directly labeled fluorescent DNA probe specific for the alpha satellite DNA sequence at the centromeric region of chromosome 17 (17p11.1-q11.1). The probes were premixed and predenatured in hybridization buffer for ease of use.

The nuclei were routinely counterstained with an intercalating fluorescent counterstain, 4'-6'-diamidino-2'-phenylindole (DAPI). Staining was visualized with a Zeiss Axioskop 20 fluorescence microscope (Carl Zeiss, Inc, Oberkochen, Germany). SK-BR-3 human breast cancer cells, known to have HER-2/neu gene amplification, and MDA-MB-468 human breast cancer cells, known to lack HER-2/neu gene amplification, were used as control cells (American Type Culture Collection, HTB30 and HTB132)34 (unpublished data). For each tumor, 60 tumor cell nuclei were identified and scored for both HER-2/neu and chromosome 17 centromere number. Using criteria established for Southern hybridization,2,16,18 HER-2/neu gene amplification was defined as a HER-2/neu-to-chromosome 17 ratio greater than 2.0 as required by the manufacturer.

FISH to Evaluate Gene Amplification Using Only a HER-2/neu Probe
An indirect method for localization of the HER-2/neu gene by FISH, Ventana InformHer (Ventana Medical Systems, Inc), was performed as previously described7 and as approved by the FDA. Briefly, sections of formalin-fixed, paraffin-embedded breast cancer tissue were mounted on microscope slides and pretreated chemically (Pretreatment step, reduction of peptide disulfide bonds) and enzymatically (Protein digestion step, digestion of proteins) to remove proteins that block DNA access. The DNA in the sections was converted from double to single strands by denaturation at 75°C using a mixture of 20x saline sodium citrate and formamide. A hybridization solution, containing a digoxigenin-labeled DNA probe complementary to the HER-2/neu gene sequence, was applied to the tissue sections. Incubation was carried out under conditions favorable for annealing of probe DNA and genomic DNA sequences as described by the manufacturer (Ventana, Inc). Unannealed probe was washed off using a mixture of 20x saline sodium citrate and formamide. The hybridized probe was detected using a fluorescein-labeled avidin, which bound to biotin on the DNA probe, thereby immobilizing the fluorescein at the site of the HER-2/neu gene. The remainder of the DNA was then stained with DAPI in Antifade. Excitement of fluorescein and DAPI by light from a mercury arc lamp with appropriate filters in a Zeiss fluorescence microscope resulted in the emission of green and blue light, respectively. The observer selected these two colors by using a microscope filter set designed for simultaneous viewing of DAPI and fluorescein, and scored nuclei in the tissue section for the number of green signals in blue nuclei.

For each specimen, gene copy level was assessed in two areas of 20 nonoverlapping tumor cell nuclei. A tumor was amplified if there were more than four copies of HER-2/neu per cell, as described elsewhere7 and as required by the manufacturer (Ventana, Inc). Staining was visualized with a Zeiss fluorescence microscope. SK-BR-3 human breast cancer cells, known to have HER-2/neu gene amplification, and MDA-MB-468 human breast cancer cells, known to lack HER-2/neu gene amplification, were used as control cells.

Immunohistochemical Assay for HER-2/neu Protein Using the R60 Polyclonal Antibody
Rabbit polyclonal antibody (R60) was used with the peroxidase antiperoxidase immunohistochemical technique to demonstrate HER-2/neu protein product in tissue sections, as described in detail elsewhere.2,6,32 We have demonstrated the specificity of the primary R60 antibody for HER-2/neu receptor protein with western immunoblot analyses and competition studies performed using the peroxidase antiperoxidase technique.18 This immunohistochemical technique involved incubation of the tissue sections with the following three different antibodies: a primary rabbit R60 HER-2/neu antibody (1:1000 dilution, overnight incubation at 2°C); a secondary or bridging goat anti-immunoglobulin G antibody (1:50 dilution, 30 minutes, room temperature)(Zymed, Inc, South San Francisco, CA); and, finally, a rabbit peroxidase antiperoxidase antibody with bound horseradish peroxidase (1:50 dilution, 30 minutes, room temperature)(Sternberger, Inc, Lutherville, MD). The site of immunoprecipitates was identified using the chromogen, diaminobenzidine, which can be visualized microscopically after reaction with horseradish peroxidase. The tissue sections were counterstained with ethyl green and evaluated with an Olympus BH-2 bright field microscope (Olympus America, Inc, Melville, NY) as showing low expression or overexpression according to subjective criteria described elsewhere.6,32

Immunohistochemical Assay for HER-2/neu Protein Using the 10H8 Monoclonal Antibody
Mouse monoclonal antibody to the protein product of the proto-oncogene HER-2/neu (c-erbB2) was used with the peroxidase antiperoxidase immunohistochemical technique to demonstrate this protein product in tissue sections. The immunohistochemical technique involved incubation of the tissue sections with two different antibody reagents: the primary mouse antibody specific for HER-2/neu receptor protein (10H8 monoclonal antibody, 5 µg/mL, 30 minutes, room temperature), followed by a goat antimouse immunoglobulin conjugated to a HRP-labelled dextran polymer (Envision+, 30 minutes, room temperature; DAKO, Corp). The site of immunoprecipitates was identified using a chromogen, diaminobenzidine, visualized microscopically. Prediluted goat antimouse immunoglobulin G conjugated to HRP-labelled dextran polymer (Envision+) was used as specified by the manufacturer (DAKO Corp, catalog no. K4001). The specificity of the primary antibody for HER-2/neu receptor protein has been previously demonstrated with western immunoblot analysis, immunoprecipitation assays and competition studies performed using the peroxidase antiperoxidase technique.35 Immunostaining was scored subjectly with an Olympus bright-field microscope as strong continuous membrane staining (high immunostaining), moderate continuous membrane staining (medium immunostaining), weak barely detectable membrane staining (low immunostaining), and an absence of membrane staining (low immunostaining). Strong and moderate membrane staining were considered to represent overexpression, and no membrane staining or weak membrane staining was considered to represent low HER-2/neu expression.

DAKO HercepTest for Immunoenzymatic Staining to Detect HER-2/neu Protein
The HercepTest (DAKO, Corp) is a subjectively scored immunohistochemical assay used to determine HER-2/neu protein overexpression in histologic sections of breast cancer specimens. The HercepTest is approved by the FDA (September, 1998) for selection of women with breast cancer to receive trastuzumab humanized monoclonal antibody therapy. In this study, the HercepTest was performed according to the approved protocol as described by the manufacturer. Tissue sections were cut, mounted on plus slides, heat-treated for antigen retrieval, and immunostained. Antigen retrieval involved boiling the tissue sections at 95°C to 99°C in 10 mmol/L citrate buffer for 40 minutes. The sections were cooled and treated with peroxidase-blocking reagent for 5 minutes, rinsed, and treated with sufficient primary rabbit HER-2/neu antibody to cover the entire tissue section for 30 minutes. The sections were rinsed again and treated for 30 minutes with visualization reagent, a solution containing both secondary goat antirabbit antibody and horseradish peroxidase linked to a common dextran polymer backbone. After rinsing away excess visualization reagent, the sections were incubated in diaminobenzidine for 10 minutes to identify the location of immunoprecipitates. The tissue sections were processed with the DAKO Autostainer Universal Staining System according to the instructions of the manufacturer (DAKO, Corp). The sections were counterstained with hematoxylin and mounted in Permount. Immunostaining was interpreted with a bright-field Olympus microscope according to the scoring system of the manufacturer as 0, 1+, 2+, and 3+ (DAKO, Corp); 2+ and 3+ immunostaining was considered to be overexpression and 0/1+ immunostaining was considered to be low expression.

Immunohistochemical Assay for HER-2/neu Protein Using the CB11 Monoclonal Antibody
The protocol and instructions provided by Ventana Medical Systems, Inc, were used for the CB11 immunohistochemical assay under the supervision of a Ventana employee. Prediluted anti–HER-2/neu monoclonal antibody CB11 (Ventana Medical Systems, Inc) was used with ready-to-use detection kits and a Ventana Automated Slide Stainer according to the manufacturer’s specifications to detect HER-2/neu. Each antigen-retrieved slide was labeled with the appropriate bar code specifying the staining procedure. The sequence of staining procedures carried out by the automated slide stainer included application of inhibitor solution to decrease endogenous peroxidase activity (4 minutes, 37°C), application of primary antibody (CB11, prepared by the manufacturer at approximately 0.63 µg/mL, 32 minutes, 37°C), application of biotinylated secondary antibody (8 minutes, 37°C), application of avidin/streptavidin-enzyme conjugate (8 minutes, 37°C), and application of diaminobenzidine chromogenic substrate. The specimen processing was supervised by a representative of the manufacturer to ensure that the tissue was processed appropriately. The immunostaining was scored 0, 1+, 2+, and 3+, with 2+ and 3+ considered overexpression, as described previously.36-38

Statistical Analyses
For each of the six assay methods, the sensitivity, specificity, and accuracy were calculated using the known HER-2/neu status of the tumor as the gold standard. Exact binomial 95% confidence intervals (CI) were calculated for each of these measures. To measure the degree of concordance (or accuracy corrected for agreement by chance), the kappa statistic and its 95% CI were calculated.39 In general, values of kappa greater than or equal to 0.91 are considered to represent almost perfect agreement with 1.0 being perfect agreement.40,41 The sensitivity and accuracy measures were compared using Fisher’s exact test.


    RESULTS
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
One hundred seventeen breast cancer specimens with known HER-2/neu amplification and overexpression status determined by solid matrix blotting techniques and immunohistochemistry in previous studies2,6,11 were reanalyzed as paraffin-embedded tissue sections for gene amplification using two FISH methods and for HER-2/neu overexpression using four different immunohistochemical assays.

FISH for Gene Amplification Using Both HER-2/neu and Chromosome 17 Centromere Probes
The average HER-2/neu gene copy number and chromosome 17 centromere copy number were determined in 60 tumor cell nuclei from each of the 117 breast cancer specimens (Fig 1). The HER-2/neu-to-chromosome 17 ratios varied from 0.69 to 19.07; values greater than or equal to 2.0 demonstrate gene amplification. Forty-two breast cancers were amplified in this assay, and 75 were not. After the results were unmasked, the assay sensitivity was 95.4% (41 of 43 breast cancers), and the specificity was 98.6% (73 of 74) (Table 1). Two breast cancers, known to have gene amplification, had HER-2/neu-to-chromosome 17 centromere ratios of 1.98 and 1.89. Another breast cancer, known to lack gene amplification, had a HER-2/neu-to-chromosome 17 centromere ratio of 4.06. One hundred fourteen of the 117 breast carcinomas were correctly categorized, for an accuracy rate of 97.4%. The degree of concordance (kappa) was 0.945 (95% CI, 0.883 to 1.0).



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Fig 1. Comparison of FISH and immunohistochemical staining. The FISH and immunostaining results are illustrated for two breast cancers (A and B) known to have gene amplification and overexpression. In one breast cancer (A) (MTB#1, 3-3), all assay methods (A1-A6) demonstrated positive HER-2/neu results. In the other breast cancer (B) (MTB#1, 2-6), both FISH assays (B1, B2) and one immunohistochemical assay (B4) demonstrated positive HER-2/neu results. (A1 and B1) Vysis PathVysion FISH assay. (A2 and B2) Ventan InformHer FISH assay. (A3 and B3) Rabbit R60 polyclonal antibody immunohistochemical assay. (A4 and B4) Mouse 10H8 monoclonal antibody immunohistochemical assay. (A5 and B5) DAKO HercepTest immunohistochemical assay. (A6 and B6) Ventana CB11 immunohistochemical assay.

 

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Table 1. Comparison of FISH and Immunohistochemical Assay Results Using 117 Breast Cancers With Known HER-2/neu Gene Amplification and Overexpression Status
 
FISH to Evaluate Gene Amplification Using Only a HER-2/neu Probe
The number of HER-2/neu gene copies was determined in 20 tumor cell nuclei for each of two microscopic fields in the 117 breast cancer specimens using FISH with a digoxigenin-labeled cosmid probe (Ventana, Inc) (Fig 1). The average number of HER-2/neu gene copies per tumor cell nucleus ranged from 1.28 to 25.50; values greater than or equal to 4.0 demonstrate gene amplification. The sensitivity of this FISH assay was 95.4% (41 of 43 breast cancers); the specificity was 96.0% (71 of 74); and the accuracy was 95.7% (112 of 117) (Table 1). The degree of concordance (kappa) was 0.909 (95% CI, 0.830 to 0.987). Forty-four of the 117 breast cancers had more than 4.0 HER-2/neu gene copies per tumor cell nucleus, and 73 had less than 4.0 HER-2/neu gene copies per tumor cell nucleus. One of the three cases with a false-positive result was the same case as the single false-positive result found with the Vysis FISH assay (average of 8.30 HER-2/neu gene copies per tumor cell nucleus). The other two false-positive results were above the cutoff of 4.0 (4.93 and 4.38). The two false-negative cases had averages of 3.58 and 3.97 HER-2/neu gene copies per tumor cell nucleus. These were the same two cases identified as false-negatives with the Vysis FISH assay (above).

Immunohistochemical Assay for HER-2/neu Protein Using the R60 Polyclonal Antibody
Overexpression of HER-2/neu protein was identified in 39 of the breast carcinomas. These breast cancers had membrane staining above the minimal low amount of membrane staining observed in normal epithelial cells, and these cases were scored as having medium- or high-intensity membrane staining, as described in Materials and Methods and elsewhere (Fig 1).2,6,32 Seventy-eight of the breast carcinomas were scored as having low expression because either no membrane staining or weak membrane immunostaining was observed. The sensitivity of immunohistochemistry with R60 polyclonal antibody was 90.6% (39 of 43 breast cancers); the specificity was 100% (74 of 74); and the accuracy was 96.6% (113 of 117) (Table 1). The degree of concordance (kappa) was 0.925 (95% CI, 0.853 to 0.997).

Immunohistochemical Assay for HER-2/neu Protein Using the 10H8 Monoclonal Antibody
Membrane immunostaining was scored as described in Materials and Methods using low-, medium-, and high-intensity categories, with medium and high immunostaining corresponding to overexpression (Fig 1). Thirty-eight of the 117 breast cancers were considered to have medium- or high-intensity immunostaining, whereas 79 were considered to have low immunostaining. When the known HER-2/neu expression status was unmasked, 38 of the 43 breast cancers with overexpression and all 74 of the low-expression breast cancers had been correctly categorized. The sensitivity of immunohistochemistry with 10H8 monoclonal antibody was 88.4% (38 of 43 breast cancers); the specificity was 100% (74 of 74); and the accuracy was 95.7% (112 of 117) (Table 1). The degree of concordance (kappa) was 0.906 (95% CI, 0.825 to 0.986).

DAKO HercepTest for Immunoenzymatic Staining to Detect HER-2/neu Protein
Immunostaining of HER-2/neu oncoprotein by the HercepTest kit was assessed as 0, 1+, 2+, and 3+, as described by the manufacturer, with 0 and 1+ scored as low expression and 2+ and 3+ scored as overexpression. Seventeen breast cancers had 3+ immunostaining, 13 had 2+ immunostaining, five had 1+ immunostaining, and 82 had no immunostaining. Unmasking of the known expression levels demonstrated that 30 of 43 breast cancers with overexpression and all 74 breast cancers with low expression had been correctly categorized. The sensitivity was 69.8% (30 of 43 breast cancers); the specificity was 100% (74 of 74); and the accuracy was 88.9% (104 of 117). The degree of concordance (kappa) was 0.745 (95% CI, 0.618 to 0.871). The HercepTest would have had a substantially higher false-negative rate if only the 3+ breast cancers had been considered positive (sensitivity, 13 of 43 = 30.2%; false-negatives = 69.8%).

Immunohistochemical Assay for HER-2/neu Protein Using the CB11 Monoclonal Antibody
Immunostaining with the CB11 monoclonal antibody was evaluated as recommended by the manufacturer (Ventana, Inc). Thirty-one breast cancers were assessed as having HER-2/neu overexpression, and 86 were assessed as having low expression. Unmasking of the known expression levels demonstrated that 31 of the 43 known overexpressors and all 74 of the known low expressors had been correctly categorized. Five breast cancers had 1+ immunostaining; four of these breast cancers were known amplified overexpressors. The sensitivity of immunohistochemistry with the CB11 monoclonal antibody was, therefore, 72.1% (31 of 43 breast cancers); the specificity was 100% (74 of 74); and the accuracy was 89.7% (105 of 117). The degree of concordance (kappa) was 0.766 (95% CI, 0.644 to 0.888). If any degree of membrane staining (1+, 2+, or 3+) was considered overexpression, then the specificity was 81.4% (35 of 43); the sensitivity was 98.6% (73 of 74), and the accuracy was 92.3% (108 of 117).

Comparison of FISH and Immunohistochemical Assays
Overall, the Vysis FISH assay was the most accurate, followed by the R60 immunohistochemical assay, the Ventana FISH assay, the 10H8 immunohistochemical assay, the Ventana CB11 immunohistochemical assay, and the DAKO HercepTest (Table 1). In our hands, the immunohistochemical assays had perfect specificity but they had lower sensitivity. Because of 12 Ventana (considering 2+ and 3+ as overexpression) or 13 DAKO Herceptest immunohistochemistry false-negative results, the results for the immunohistochemical DAKO HercepTest and immunohistochemical Ventana CB11 assay were significantly lower than the Vysis FISH assay with regard to sensitivity and, therefore, accuracy.

The same two cases, known to be amplified by previous analyses, were not scored as amplified with either the Vysis FISH assay (ratios less than 2.0; ie, 1.98 and 1.89 by the Vysis PathVision assay system) or the Ventana FISH assay (HER-2/neu gene copy levels less than 4.0; ie, 3.58 and 3.97). Both of these cases showed moderate (2+) immunostaining with the polyclonal R60 immunohistochemical assay but not with any of the other immunohistochemical assays. One breast cancer, known to lack amplification by previous analyses, was evaluated as amplified with both FISH assays (HER-2/neu-to-chromosome 17 ratio of 4.06 by the Vysis assay and a HER-2/neu gene copy number of 8.30 by the Ventana assay). Membrane immunostaining was detected in this case by 10H8 monoclonal antibody and the HercepTest (1+) but was not sufficiently strong to be scored as overexpression by either assay. A second breast cancer, known to lack amplification by previous analyses, was evaluated as amplified with only one of the two FISH assays (a HER-2/neu gene copy number of 4.93 by the Ventana assay). None of the immunohistochemical assays demonstrated any membrane immunostaining in this breast cancer.

Detection at Various Amplification/Overexpression Levels
Overall, those breast cancers with the highest level of gene amplification and overexpression (greater than 20-fold amplification of HER-2/neu) were identified the most frequently by each of the assay methods with one exception (Table 2). Those breast cancers with lower levels of gene amplification (two- to five-fold amplification) had a significantly lower level of detection, especially with two of the immunohistochemical assay methods evaluated manually as 2+ or 3+ membrane immunostaining (Table 2).


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Table 2. Detection With Each Assay Method by Known HER-2/neu Gene Amplification/Overexpression Status
 

    DISCUSSION
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
 REFERENCES
 
The potential role of HER-2/neu gene amplification and/or overexpression in the clinical management of women with breast cancer has been controversial since the first report.1 The initial debate was whether HER-2/neu alterations correlated with poor clinical outcome in any group of women with breast cancer.42-45 Subsequently, HER-2/neu overexpression was accepted as a predictor of disease-free survival or overall survival in women with node-positive breast cancer.46 Although some studies clearly demonstrate that node-negative patients with HER-2/neu amplification/overexpression also have shorter disease-free survival or overall survival,6-9,16 others have disputed this association.23,45,47,48 Some investigators have suggested that the differences in clinical outcome observed among patients with HER-2/neu-overexpressing node-positive breast cancer are associated not with biologic behavior of the breast cancer cells but rather with responsiveness to treatment,46 accounting for the differences observed in node-negative and node-positive breast cancers. However, several studies of clinical outcome among women with node-negative breast cancer treated solely by surgery demonstrated significant survival benefits associated with low expression of HER-2/neu compared with HER-2/neu overexpression.6,7,14,16 Lack of agreement among these studies may also be related to the differing sensitivities and specificities of the assay methods used to assess HER-2/neu as a prognostic marker6,32 and to lack of statistical power of some of the studies.6,8 Although HER-2/neu gene amplification or overexpression seems to be a marker of poor prognosis in both node-negative and node-positive breast cancer, the major interest in this alteration is related to its utility as a predictive marker of responsiveness to treatment.

Some studies have shown HER-2/neu overexpression predicts responsiveness to high-dose doxorubicin chemotherapy,20,25 lack of responsiveness to cyclophosphamide, methotrexate, and fluorouracil chemotherapy,12,23 and lack of responsiveness to tamoxifen therapy.26,28 However, HER-2/neu’s role as a predictor of responsiveness to therapy has been questioned because these initial observations have not been confirmed in some subsequent investigations.24,49 Recently, a recombinant humanized, anti–HER-2/neu antibody, known as trastuzamab, was approved by the FDA for treatment of women with metastatic breast cancer whose tumors overexpress HER-2/neu. Although trastuzamab has shown efficacy in this clinical setting, the response rate has been variable in the initial clinical trials.50-52

A major problem when interpreting the published studies of HER-2/neu in the clinical setting is that different methods have been used to evaluate HER-2/neu alterations. These methodologic differences likely contribute substantially to these conflicting results and, therefore, conflicting conclusions related to HER-2/neu. The primary method used in the majority of these published studies is immunohistochemistry using archival, paraffin-embedded tissue blocks. However, this method is not performed consistently across laboratories. Furthermore, few of these laboratories have validated their immunohistochemical staining assessments using standardized specimens with known molecular changes. We previously demonstrated that available antibodies commonly used for immunohistochemistry have a wide range of sensitivities when used in molecularly characterized, archival, paraffin-embedded specimens.32 None of the tested antibodies identified all of the known HER-2/neu–amplified, overexpression breast cancers. These antibodies were developed from animals immunized with native, nonfixed HER-2/neu protein as antigen. Therefore, it is not surprising that HER-2/neu would not be recognized in some formalin-fixed breast cancer specimens because none of the HER-2/neu antibodies were produced using formalin-fixed HER-2/neu protein as antigen.

Our previous evaluation of HER-2/neu antibodies32 has been criticized because epitope retrieval methods were not used in our evaluation, the peroxidase antiperoxidase technique was used with all antibodies, and small samples of each tissue specimen were used.31,53,54 The primary goal of our previous study was to demonstrate that differences in antibody sensitivity could account for the differing conclusions about HER-2/neu’s clinical utility described among published articles. At the time our study was conducted, none of the published articles had used heat-induced epitope retrieval as part of the immunohistochemical procedure. As we described in our article, "although the sensitivities of various antibodies have been characterized under the described routine conditions permitting more rational selection of immunostaining reagents, it is anticipated that there will be further improvements in HER-2/neu sensitivity in paraffin-embedded tissues as more antibodies become available for testing and as techniques for immunostaining improve. For example, the sensitivity of several of these antibodies is enhanced by ‘antigen retrieval’ with microwave pretreatment of the tissue sections".32 We consider the use of a single immunostaining detection system in the previous study to be important for comparison between different antibodies on an equal basis. Therefore, the identified differences are due to differences in the primary antibodies and not due to differences in detection systems. Finally, we consider the use of small specimens to be an important asset in the study design because it ensured that the same area of the specimen was evaluated with each antibody, ensuring consistency in the comparison areas.

Our primary objective in the current study is different from the previous study. It is well-recognized that differences in the methods used to evaluate HER-2/neu can lead to substantial differences in conclusions regarding clinical utility. Our goal in this study is to compare FDA-approved assay methods with one another and with our own in-house immunohistochemistry assays to determine which of these is the most accurate.

Variability in sensitivity is expected because formalin-fixation and paraffin-embedding adversely effect antigenicity and immunostaining of the vast majority of protein antigens and the ability of antibodies to recognize their epitope varies from antibody to antibody. Hence, one expects that formalin-fixation and paraffin-embedding will be associated with reduced immunostaining relative to that observed in frozen tissue sections from the same specimen.2 Many believe that the loss of antigenicity in paraffin-embedded specimens can be corrected by application of heat-induced antigen retrieval to the paraffin-embedded tissue sections such as is performed with the DAKO Herceptest. However, once again, this approach has not been validated before introduction of these reagents and methods by systematic evaluation of clinical breast cancer specimens with known amplification/overexpression levels.

In September 1998, the DAKO Herceptest was approved by the FDA to evaluate HER-2/neu expression for patient eligibility to receive trastuzamab treatment. The evaluation consisted of a comparison of immunostaining obtained with the Herceptest to immunostaining obtained with the "Clinical Trials Assay" (CTA) previously used by Genentech, Inc, to screen patient tumors for entry to their pivotal trastuzamab clinical trials (H0648, H0649, and H0650).36-38 The CTA used CB11 and 4D5 mouse monoclonal antibodies with an indirect avidin-biotin technique to detect HER-2/neu membrane receptor protein. Immunostaining with the Herceptest was found to be in agreement with the immunostaining result obtained from the CTA assay in 79% of 548 paraffin-embedded breast cancer specimens. The Ventana Pathway CB11 immunohistochemical assay was approved by the FDA as a diagnostic assay to aid in the selection of patients likely to benefit from trastuzamab therapy in November, 2000. Approval of the CB11 Pathway assay was based on concordance analysis between the DAKO Herceptest and Pathway CB11 assays. Immunostaining with Pathway CB11 was found to be in agreement with the Herceptest in 86% of 450 paraffin-embedded breast cancer specimens. Neither of these immunohistochemical assay comparisons was performed with specimens molecularly characterized for HER-2/neu gene amplification or overexpression. None of the specimens used for comparison had clinical outcome information available nor were any of these women part of a trastuzamab clinical trial.

In the past, few investigators have provided data related to the screening or evaluation of HER-2/neu antibodies for use as immunohistochemical reagents, especially in formalin-fixed, paraffin-embedded tissue sections before using those antibodies to analyze study cohorts.6,32,55 Consequently, the conclusions of prognostic marker evaluations and predictive marker studies performed using these uncharacterized immunohistochemical assays are open to criticism. Currently, several groups have reported immunohistochemical staining with primarily the DAKO HercepTest or the Ventana immunohistochemical assay using CB11 monoclonal antibody. Some groups have compared immunohistochemical staining with these reagents to gene amplification determined by FISH with either the Vysis assay or the Ventana assay systems.31,54

In our current study, FISH analyses were compared with immunohistochemical assay evaluations of a group of molecularly characterized breast cancer cases. FISH of the HER-2/neu gene involves hybridization of a specific DNA probe with sequences complementary to the gene to permit assessment of the number of copies of this gene in individual tumor cell nuclei. FISH technology combines the advantages of molecular methods permitting localization of HER-2/neu gene copies in morphologically identified tumor cell nuclei. Immunohistochemistry involves recognition of antigenic determinants of p185HER-2/neu in the tumor cell membranes and permits a cell-by-cell assessment of protein expression. However, HER-2/neu immunohistochemistry suffers from a lack of characterization of which fixatives or fixation times are suitable for preservation of antigen immunoreactivity, lack of adequate internal immunostaining controls, and subjective assessment of membrane immunostaining. Although the range of fixatives most appropriate for FISH are also not characterized, the use of normal cells, present in each breast cancer specimen, as internal hybridization controls to confirm localization of an average of two HER-2/neu gene copies and two chromosome 17 centromeres per normal cell nucleus permits an assessment of the appropriateness of the results. Both FISH and immunohistochemistry are applicable to tumors of all sizes and can be performed on sections from the original specimen blocks used for diagnosis. Further, if carcinoma cells were localized rather than diffusely distributed within a tumor, amplification would be detectable by FISH but, in stroma-rich breast cancers, could be diluted below detectable limits by solid matrix blotting of DNA extracted from the tumor due to abundant noncarcinoma cellular DNA.

Because of confusion about the reliability of various HER-2/neu assays for entry onto clinical trials evaluating responsiveness to experimental treatments with trastuzamab and because accurate assignment of women with breast cancer for clinical management decisions is now so important, we evaluated two FISH assay methods for gene amplification and a group of HER-2/neu immunohistochemical assays that are either in wide-spread use for clinical testing (Ventana CB11 and DAKO HercepTest) or have been used in our own laboratory (R60 and 10H8) for assessment of HER-2/neu overexpression, comparing results with these assays to the results of HER-2/neu gene amplification/overexpression obtained using standard molecular biologic methods. Our findings demonstrated that the FISH assays have higher sensitivity and higher accuracy and more frequently correctly identify altered HER-2/neu status (amplification/overexpression) in previously molecularly characterized specimens than did the FDA-approved immunohistochemistry assays interpreted manually. The in-house immunohistochemical assays most frequently used in our laboratory had a sensitivity that was slightly lower but did not differ significantly from the FISH assay results. Based on these findings, if one’s selection of HER-2/neu assays is restricted to commercially available assays, we recommend the use of FISH assays until the short-comings of tissue processing, limited antibody sensitivity for fixed antigen, and variable immunohistochemical scoring can be satisfactorily resolved. At the time when these issues are adequately resolved assay comparability should be reassessed.

Standardized thresholds for interpretation of immunohistochemical staining that can be exported from laboratory to laboratory and pathologist to pathologist are needed. Although manual interpretation of HER-2/neu immunostaining in our laboratory and in the laboratories of some other investigators53 has been performed in a standardized fashion, the results obtained by others in other laboratories can be quite different. Our approach to manual or subjective interpretation of HER-2/neu immunostaining has been different from that of several other investigators. Few have used our in-house reagents because they have been produced in our laboratories and are not commercially available.2,18,35 Our approach to scoring immunostaining also differs from that of other investigators. Some have used the percentage of immunostained tumor cells to score overexpression with membrane immunostaining with a certain percentage of positively stained tumor cells considered overexpression,20,24,28,29,56,57 whereas we consider membrane intensity, not percentage of stained cells, to be the most important criterion. Our experience with frozen tissues demonstrates relatively little cell-to-cell heterogeneity within a given cancer. Cancers with amplification and overexpression have overexpression in essentially all tumor cells to a similar level.2,18 However, formalin-fixation and paraffin-embedding of tumor tissue from breast cancers previously evaluated as frozen specimens demonstrates both a loss of immunoreactivity and the introduction of heterogeneity that was not present in the original material.2,6

In contrast to the experience of some investigators,30,31 in this study we had an exceptionally low rate of false-positive results observed with heat-induced antigen retrieval performed with the DAKO HercepTest immunohistochemical assay. However our false-negative rate was significant. There were no characteristics of the immunostains (or the tumor morphology) that permitted us to predict which cases would be false-negatives with any of the immunohistochemical stains. This high false-negative rate and low false-positive rate may be related to differences in tissue processing because our tissues were processed in buffered formalin not in alcoholic formalin.30,31 However, the problem of wide variability in interpretation of HER-2/neu immunostaining has become increasingly apparent. The high false-positive results observed by some investigators may not be only due to differences in tissue fixation and specimen processing, they may be related to differences in interpretation of the immunostained specimens. For example, in our clinical reference laboratory we have observed substantial variability in the interpretation of HER-2/neu status for immunostained slides or tissue samples provided to obtain a second or third opinion (unpublished data). These preliminary results showed agreement of our laboratory assay results and interpretations with the immunohistochemistry assays performed and interpreted by outside pathologists in only approximately 53% of cases with regard to interpretation of HER-2/neu overexpression versus low expression status (2+/3+ v 0/1+). Similarly, a review of the first 680 cases analyzed in our centralized Breast Cancer International Research Group (BCIRG) laboratory for evaluation of HER-2/neu gene amplification as part of the entry criteria for BCIRG005 and BCIRG006 clinical trials demonstrated concordance with the outside or local immunohistochemistry staining result in only approximately 83% of breast cancers (unpublished data). Most of these discrepancies with outside laboratories in both our reference laboratory specimens and our BCIRG Central Laboratory specimens were false-positive results in the outside laboratory.

In addition to differences in tissue processing, assay reagents used in immunohistochemistry and differences in performing the immunohistochemical assay with or without antigen retrieval and differences in subjective interpretation of the assay can lead to substantial differences in assessment of overexpression in immunohistochemical assays. Such striking variability in interpretation of FISH results has not been demonstrated. The College of American Pathologists (CAP) reported the CAP survey results for proficiency in HER-2/neu testing.58 In contrast to the results from immunohistochemistry laboratories, complete concordance was observed among the results obtained from laboratories performing FISH assays.58 Our experience has been similar with FISH in our centralized BCIRG laboratory compared with FISH performed in referring laboratories showing a concordance rate of 96% (unpublished data).

In conclusion, FISH assays proved to be highly sensitive and specific for detecting HER-2/neu gene amplification. Although less sensitive, our interpretations of in-house immunohistochemical assays were not significantly different from the FISH assays for identification of overexpression. However, two commercially available, FDA-approved immunohistochemical assays were significantly less sensitive at detecting breast cancers with overexpression and were, therefore, less accurate.


    ACKNOWLEDGMENTS
 
Supported by grant no. CA48780 from the National Cancer Institute, grant no. NO1-HD-3-3175 from the National Institute for Child Health and Human Development, Bethesda, MD, and grant no. BCRP 5EB-3101 from the California Breast Cancer Research Program, Oakland, CA. J.P. was supported by grant no. DAMD17-97-1-7161 from the United States Army Medical Research and Materiel Command, Fort Detrick, MD.

We thank Ivonne Villalobos for assistance in the preparation of this manuscript, Craig Sawtelle from Ventana Medical Systems, Inc, for participating in CB11 immunostaining, and Karen Petrosyan, MD, for technical assistance.


    REFERENCES
 TOP
 ABSTRACT
 INTRODUCTION
 MATERIALS AND METHODS
 RESULTS
 DISCUSSION
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Submitted September 21, 2001; accepted April 23, 2002.


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