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Originally published as JCO Early Release 10.1200/JCO.2006.06.1101 on September 11 2006

Journal of Clinical Oncology, Vol 24, No 29 (October 10), 2006: pp. 4731-4737
© 2006 American Society of Clinical Oncology.

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RRM1 Modulated In Vitro and In Vivo Efficacy of Gemcitabine and Platinum in Non–Small-Cell Lung Cancer

Gerold Bepler, Irina Kusmartseva, Swati Sharma, Ashish Gautam, Alan Cantor, Anupama Sharma, George Simon

From the Program and Division of Thoracic Oncology, H. Lee Moffitt Cancer Center and Research Institute, Tampa, FL

Address reprint requests to Gerold Bepler, MD, PhD, H. Lee Moffitt Cancer Center and Research Institute, MRC-4W, Room 4046, 12902 Magnolia Dr, Tampa, FL 33612-9497; e-mail: beplerg{at}moffitt.usf.edu


    ABSTRACT
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
PURPOSE: RRM1 encodes the regulatory subunit of ribonucleotide reductase and is a molecular target of gemcitabine. Previous studies showed increased RRM1 expression on continuous exposure of cell lines to gemcitabine and suggested improved survival for patients with low as opposed to high tumoral RRM1 expression when treated with gemcitabine-containing chemotherapy. However, the principal hypothesis that intratumoral levels of gene expression are associated with disease response has not been addressed.

PATIENTS AND METHODS: We constructed genetically modified lung cancer cell lines with increased and decreased RRM1 expression to investigate the in vitro 50% inhibitory concentration (IC50) for gemcitabine, cisplatin, and carboplatin. A prospective phase II clinical trial in patients with locally advanced non–small-cell lung cancer was conducted with pretreatment tumor collection for determination of RRM1 and ERCC1 expression by real-time reverse transcriptase polymerase chain reaction. The levels of gene expression were correlated with tumor response after two cycles of gemcitabine and carboplatin.

RESULTS: In cell lines with a genetically engineered 15-fold RRM1 expression range, the gemcitabine IC50 had a 100-fold range, and the cisplatin and carboplatin IC50 had a two-fold range. They were highest in constructs with high RRM1 expression. In the prospective clinical trial, RRM1 expression was significantly (P = .002) and inversely correlated (r = –0.498) with disease response. ERCC1 expression showed a similar trend (P = .099).

CONCLUSION: The results strongly suggest that tumoral RRM1 expression is a major predictor of disease response to gemcitabine/platinum chemotherapy. ERCC1 expression is predictive of response albeit to a lesser degree.


    INTRODUCTION
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
The principal chemotherapeutic agents used for treatment of patients with non–small-cell lung cancer (NSCLC) are platinum analogs, taxanes, gemcitabine, and vinorelbine. Response rates in patients with advanced stages of the disease to dual agent therapy, the current standard of care, are 17% to 37%; the median overall survival is 6.7 to 11.3 months, the 1-year survival rate is 31% to 46%, and the 2-year survival rate is 9% to 21%.1-7 After patients experienced treatment failure of initial therapy, response to further systemic treatment is approximately 10% for single agents.8-10 Thus, resistance to systemic therapy does not appear to be an all-or-none phenomenon, but rather a function of molecular characteristics of individual tumors. In fact, specific molecular characteristics highly associated with tumor response to a class of therapeutic agents used in NSCLC, epidermal growth factor receptor tyrosine kinase inhibitors, has recently been reported.11-13

The RRM1 gene encodes the regulatory subunit of ribonucleotide reductase, an essential enzyme that catalyzes the reduction of ribonucleoside diphosphates to the corresponding deoxyribonucleotides.14-17 It is the molecular target of gemcitabine (2',2'-difluorodeoxycytidine), an antimetabolite with activity in several malignancies including NSCLC.18-20 Earlier work had suggested that patients with low as compared with high levels of tumoral RRM1 expression had improved survival when treated with gemcitabine-based therapy.21 In addition, continuous exposure of lung cancer cell lines to increasing amounts of gemcitabine resulted in increased RRM1 expression.20 However, the principal hypothesis for these investigations (ie, intratumoral levels of RRM1 expression are associated with disease response) has not been addressed.


    PATIENTS AND METHODS
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
Generation of RRM1-Modified Stable Lung Cancer Cell Lines
H23siR1 was generated by stable transfection of NCI-H23 with a pSUPER-siRRM1 construct. To generate this construct, the pSUPER-GFP/neo vector (OligoEngine, Seattle, WA) was digested with BgIII and HindII and the annealed oligonucleotides (5'-GATCCCCGACGCTAGAGCGGTCTTATTTCAAGAGAATAAGACCGCTCTAGCGTCTTTTTGGAAA-3'and 5'-AGCTTTTCCAAAAAGACGCTAGAGCGGTCTTATTCTCTTGAAATAAGACCGCTCTAGCGTCGGG-3') were ligated into the vector. The 19-nucleotide RRM1 target sequences are underlined. The H23siCt cell line was generated with the targeting sequence GCTAATAGCGCGGAGTCTT, which has no similarity to any known gene. H23-R1 is a stable RRM1 overexpressing cell line, and H23-Ct is its corresponding control. Both were generated by transfection with full-length RRM1 cDNA cloned into the expression plasmid pCMV-Tag2 (Stratagene, La Jolla, CA) as previously described.22 The level of RRM1 expression in these cell lines was assessed at the RNA level by real-time quantitative reverse transcriptase polymerase chain reaction (RT-PCR) using custom-designed and validated primers and probes and at the protein level by Western blot analysis.23

In Vitro Drug Testing
A modified MTT assay with 3-(4,5-dimethylthiazol-2-yl)-5-(3-carboxymethoxyphenyl)-2-(4-sulfophenyl)-2H-tetrazolium as the reagent was used, MTS assay (Promega, Madison, WI). It was performed by seeding 4,000 cells/well in 96-well flat bottom plates. H23-Ct, H23-R1, H23siR1, and H23siCt cells were continuously exposed to drug for 72 or 96 hours. After 3 hours of incubation at 37°C, the absorbance was measured at 490 nm in a microplate reader (Benchmark Plus; Bio-Rad, Hercules, CA). All experiments were repeated three times. The in vitro drug concentration that inhibited cell growth by 50% (IC50) was calculated as ([mean absorbance in triplicate wells containing the drug – mean absorbance in triplicate blank wells]/[mean absorbance in triplicate drug-free wells – mean absorbance in triplicate blank wells])x100.

To determine drug-induced in vitro apoptosis, 3x105 cells/well were seeded in six well plates and allowed to attach overnight. Chemotherapeutic agents were added to the culture at the indicated concentrations. After 2, 4, and 6 hours of treatment, annexin V labeling of the cells was performed as recommended by the manufacturer (BD Pharmingen, San Diego, CA). The percentage of labeled cells was determined by flow cytometry (FACScalibur, Becton Dickinson, Franklin Lakes, NJ).

Clinical Trial
A trial was designed to prospectively assess the impact of tumoral RRM1 expression on efficacy of gemcitabine-based chemotherapy in previously untreated patients with NSCLC. A secondary trial end point was to determine the impact of tumoral ERCC1 (excision repair cross-complementing gene) expression on treatment efficacy. For this, we determined the response to gemcitabine and carboplatin as induction therapy (IndGC) in patients with locally advanced and inoperable NSCLC. Double agent chemotherapy was chosen because single-agent therapy is deemed inadequate for previously untreated patients with any stage of NSCLC and a performance status of 0 to 1.24 Trial eligibility included histologically confirmed NSCLC, inoperable stage IIIA or IIIB disease (patients with cytologically positive pleural effusion were excluded; and exemption was made for one patient with stage IIB disease), measurable disease by Response Evaluation Criteria in Solid Tumors (RECIST),25 no prior systemic chemotherapy or thoracic radiation, Eastern Cooperative Oncology Group performance status 0 or 1, absence of weight loss (≤ 5% in the 3 months preceding diagnosis), and adequate bone marrow, liver, and kidney function. All patients were staged with computed tomography (CT) of the chest and upper abdomen, whole body [18F]fluorodeoxyglucose positron emission tomography (PET), and magnetic resonance imaging of the brain. IndGC consisted of two 28-day cycles of gemcitabine, 1,000 mg/m2, given on days 1 and 8 and carboplatin, area under the curve 5, given on day 1. CT and PET were repeated in week 8, and disease response was assessed. Thereafter, patients received concurrent radiation and chemotherapy for definitive treatment of their disease. The study required the collection of tumor specimens specifically for molecular analyses before therapy, which was performed by core needle biopsy that produced a tissue specimen of 0.8 mm diameter. Specimens were immediately frozen in liquid nitrogen, embedded in OCT, and processed as frozen sections. Tumor cells were collected by laser capture microdissection (LCM), and RNA was extracted. The institutional review board approved the clinical trial and all patients provided written informed consent.

Disease Response Assessment
For disease response determination all measurable cancer lesions were assessed in greatest diameter using images obtained with intravenous contrast on a multichannel helical CT scanner at 5 mm intervals. Measurements were performed on a picture-archive communication system workstation (Siemens MagicView 1000, Munich, Germany), and they were repeated in week 8. The percentage of change of the sum of tumor diameters comparing the post-treatment with the pretreatment measurements was calculated using the formula 1–(SumCTpost/SumCTpre). A positive value indicated tumor shrinkage and a negative value tumor growth (ie, disease response was assessed as a continuous variable). In addition, disease response was assessed as a discrete variable using RECIST (ie, complete remission [CR], partial remission [PR], stable disease [SD], and progressive disease). The appearance of a new and previously not observed tumor lesion on imaging studies, which included a repeat PET scan in week 8, or by physical exam was coded as disease progression.

Gene Expression Analysis
Frozen tissue samples, embedded in OCT, were cut in 5 to 7 µm sections. Tumor cells were collected by LCM using the Arcturus system (60 mW, 1.5 milliseconds, intensity 100, spot size {approx}20 µm), and total RNA was extracted using a commercially available method (PicoPure RNA isolation kit, #KIT0204; Arcturus, Mountain View, CA). Complementary DNA was generated with Superscript II and oligo-dT (Invitrogen, Carlsbad, CA). Real-time quantitative RT-PCR gene analysis was performed in triplicate per sample and gene in 96-well plates (ABI prism 7700; Perkin-Elmer, Foster City, CA). Each plate contained a serial dilution of reference cDNA for standard curve determination and negative controls without template. We had designed and validated the primers and probes as previously described.23,26 Commercially available primers and probes were used for expression analysis of the housekeeping gene 18SrRNA (Perkin-Elmer, #4310893E-0203015), which was used as internal reference standard. The relative amount of target RNA in a sample was determined by comparing the threshold cycle with the standard curve, and the standardized amount was then determined by dividing the target amount by the 18SrRNA amount.

Statistical Methods
Correlation coefficients between gene expression and the continuous variables tumor response, number of cells collected by LCM, and patients' age were calculated according to Spearman. The Wilcoxon rank sum test was used to test for significance between dichotomous variables and gene expression. The Kuskal Wallis test was used to test for significance between noncontinuous variables with more than two values and gene expression.


    RESULTS
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
We used a modified MTT assay to assess the impact of RRM1 expression on therapeutic efficacy of gemcitabine and platinum analogs in vitro. H23, originating from a lung adenocarcinoma, was used as the parent cell line.27 H23-R1 had a 2.5- to 3.5-fold increased RRM1 expression compared with H23.22 H23siR1 had a five-fold reduced RRM1 expression. The expression levels of RRM1 and control genes were determined by real-time quantitative RT-PCR and Western blotting. The expression of RRM2, the catalytic ribonucleotide reductase subunit, was unaffected. The sensitivity of these cell lines to gemcitabine, cisplatin, and carboplatin was compared with transfected control cell lines (H23-Ct and H23siCt). The results are summarized in Table 1. Increased RRM1 expression resulted in resistance to gemcitabine (Fig 1). The gemcitabine IC50 of H23-R1 was eight-fold higher than the IC50 of H23-Ct. Reduced RRM1 expression increased sensitivity to gemcitabine (Fig 1). The gemcitabine IC50 of H23siR1 was 10-fold lower than the IC50 of H23siCt. The response of the parental cell line (H23) to gemcitabine was similar to the response of H23-Ct and H23siCt. There was a similar relationship between RRM1 expression and cytotoxicity response to cisplatin (Fig 1 and Table 1) and carboplatin albeit to a lesser degree. H23-R1 was 1.2- to 1.5-fold more resistant and H23siR1 was 1.1- to 1.3-fold more sensitive to platinum analogs than the corresponding control cell lines.


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Table 1. In Vitro Response of Cell Lines With Modified RRM1 Expression Levels

 

Figure 1
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Fig 1. In vitro cytotoxicity of gemcitabine and cisplatin in H23-R1, H23-Ct, H23siR1, and H23siCt. Cells were exposed to various drug concentrations for 72 hours, and viability was subsequently determined by MTS assays (Promega, Madison, WI). Data are means with or without SE from three independent experiments.

 
Annexin V labeling was used to assess the proportion of apoptotic cells after drug exposure. We found an inverse relationship between drug-induced cell death and RRM1 expression (Fig 2), which is consistent with the results obtained in the MTS assay. The proportion of cells labeled after 6 hours of treatment with 250 nmol/L gemcitabine was 6.6 to 6.9% in control cell lines, 2.6% in H23-R1, and 15.2% in H23siR1. Cisplatin exposure for 6 hours at 200 nmol/L yielded 14.5% to 15.1% apoptotic cells in H23-Ct and H23siCt, 5.5% apoptotic cells in H23-R1, and 19.0% apoptotic cells in H23siR1.


Figure 2
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Fig 2. In vitro apoptosis induction by gemcitabine and cisplatin in H23-R1, H23-Ct, H23siR1, and H23siCt. Cells were exposed to 250 nmol/L gemcitabine or 200 nmol/L cisplatin for 6 hours, and the proportion of cells labeled with annexin V was determined. Data are means with or without SE from three independent experiments.

 
To prospectively address the hypothesis that intratumoral RRM1 expression is predictive of response to gemcitabine-based chemotherapy, we conducted a clinical trial in patients with locally advanced NSCLC. Tumor sampling for determination of gene expression before therapy was required in all patients. They were treated with two cycles of gemcitabine and carboplatin (IndGC). Unidimensional tumor measurements were obtained before and after chemotherapy, and disease response was recorded as the percent change after treatment compared with before treatment and also categorized as CR, PR, SD, and progressive disease according to RECIST.

Between November 2003 and January 2006, 40 eligible patients were enrolled, and the required tumor biopsies were obtained from all. Three patients withdrew consent before initiation of therapy because they desired treatment closer to home. In 28 patients, the biopsies were done to obtain tissue for molecular studies only; in nine patients, they were also used to establish a diagnosis. In one patient, a pneumothorax developed that required chest tube placement. In two patients tumor collection did not yield sufficient material for gene expression analysis. From the remaining 35 patients, between 30 and 4,500 tumor cells were collected by LCM. All 35 patients completed IndGC, and disease response ranged from a 9% increase to a 100% decrease in tumor diameters. Twenty patients had SD, fourteen had PR, and one had CR. The patients' ages ranged from 47 to 87 years; 17 were women; 18 had stage IIIA, 16 had stage IIIB, and one had stage IIB disease; 11 had squamous cell carcinoma, 11 had adenocarcinoma, and 13 had large cell carcinoma or unspecified NSCLC. Two patients had been life-time never smokers, 20 had quit smoking for 1 to 46 years, and 13 were current smokers.

RRM1 expression ranged from 0.18 to 129.3. We found a significant (P = .002) inverse correlation (r = –0.498, Spearman correlation coefficient) between RRM1 expression and the magnitude of disease response (Fig 3). When grouping patients into those with response (CR/PR) and without response (SD), RRM1 expression was significantly associated with response (P = .03, {chi}2 test), where patients with high tumoral expression of RRM1 were less likely to respond to IndGC than those with low levels of expression. ERCC1 expression was determined as a secondary trial end point, and it was also inversely correlated (r = –0.283; P = .099) with the magnitude of response but not with the response classification (P = .32) to IndGC. Results are summarized in Table 2. There was no significant association between RRM1 or ERCC1 expression and the number of tumor cells collected, patients' ages or sex, tumor histopathology, tumor stage, and smoking status.


Figure 3
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Fig 3. Scatter plot of (A) RRM1 and (B) ERCC1 expression in relation to the percent change in tumor size after two cycles of gemcitabine and carboplatin chemotherapy in 35 patients. Red dots indicate patients with less than 30% tumor shrinkage (stable disease [SD]), and green dots indicate patients with greater than 30% tumor shrinkage (partial remission/complete remission [PR/CR]). The Spearman correlation coefficient was r = –0.498 (P = .002) for RRM1 and r = –0.283 (P = .099) for ERCC1.

 

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Table 2. RRM1 Expression and Association With Response to Gemcitabine and Carboplatin

 

    DISCUSSION
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
Gemcitabine is activated in cells by nucleoside kinases to gemcitabine diphosphate (dFdCDP) and gemcitabine triphosphate (dFdCTP). The cytotoxic effect of gemcitabine has been attributed to a combination of two actions that lead to inhibition of DNA synthesis and subsequent apoptosis. First, gemcitabine diphosphate inhibits ribonucleotide reductase, which is responsible for catalyzing the reactions that generate the deoxynucleotides required for DNA synthesis and repair. Then, gemcitabine triphosphate competes with dCTP for incorporation into DNA during replication, which results in a termination of chain elongation.

Gemcitabine efficacy is thought to be a function of proteins involved in activation, metabolism, and transport of the drug. Deoxycytidine kinase is required for phosphorylation of gemcitabine to its active metabolite, and low levels have been associated with drug resistance.28 High levels of cytidine deaminase inactivate gemcitabine and confer resistance to the drug.29 Equilibration-sensitive nucleoside transporter 1 facilitates intracellular gemcitabine update, and deficiency has been associated with drug resistance.30 Finally 5' nucleotidase dephosphorylates dFdCMP thus antagonizing the production of active dFdCTP. High levels of this enzyme have been found in gemcitabine resistant cell lines; and in patients with acute myelogenous leukemia receiving gemcitabine, high 5NT expression was associated with poor survival.

A recent report suggested that gemcitabine resistance, generated in vitro through exposure of two NSCLC cell lines (H358 and H460) to increasing concentrations of the drug, was primarily a function of increased expression of RRM1.20 These data were confirmed in a subcutaneous murine colon tumor model (Colon 26) where gemcitabine resistance had been generated through prolonged gemcitabine exposure and serial transplantation.31 However, induction of drug resistance through continuous exposure results in alterations in multiple genes as demonstrated by these authors. Thus, our results in genetically modified lung cancer cell lines are the first to demonstrate directly that RRM1 is a major cellular determinant of cytotoxic efficacy of gemcitabine. In addition our data demonstrate that RRM1 is a minor determinant of platinum efficacy.

We confirmed these in vitro data by demonstrating a statistically significant inverse correlation between the magnitude of change in tumor diameter and RRM1 expression in patients with NSCLC that received gemcitabine and carboplatin as first-line therapy. In addition, we found a similar but less striking relationship between ERCC1 expression and tumor response. Although previous retrospective studies had suggested this relationship for both molecules by demonstrating better patient survival in those having low RRM1 or ERCC1 expression as compared with high levels of expression if treated with gemcitabine and platinum,21,32 a direct and prospective demonstration had not been performed. Thus, our results strongly support the primary study hypothesis that RRM1 expression is predictive of response to treatment with gemcitabine.

In summary, the cumulative body of indirect and direct in vitro data and murine and human investigations provide convincing support for RRM1 as the major determinant of gemcitabine efficacy. Several issues should be addressed to facilitate implementation of RRM1 gene expression analysis into patient management. First, it is important to verify our prospective clinical results in a second prospective treatment trial and to assess if RRM1 and ERCC1 expression are similar among a wider spectrum of disease stages. Second, for clinical management of patients a categorization with defined cutoff levels for RRM1 and perhaps ERCC1 would be desirable to obtain clear positive and negative predictive values. For instance, our data suggest that none of the patients with RRM1 expression above 10 achieved a PR (0 of 11; positive predictive value for resistance, 1.0), while 15 of 24 patients with levels below 10 had an objective disease response (positive predictive value for sensitivity, 0.6). Third, the general feasibility of performing core needle biopsies of patients' tumors with immediate freezing, LCM, and subsequent sophisticated gene expression analysis appears limited given the required infrastructure. Thus, the development of a more generally applicable methodology based on technology familiar to clinical laboratories and pathologists, such as immunocytochemistry, is desirable. Fourth, it is likely that other molecular characteristics of tumor cells and the host significantly impact the RRM1-affected treatment response. It is thus important to further elucidate specific molecular features and pathways that modulate therapeutic efficacy to the agents used for lung cancer therapy.


    Authors' Disclosures of Potential Conflicts of Interest
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
Although all authors completed the disclosure declaration, the following authors or their immediate family members indicated a financial interest. No conflict exists for drugs or devices used in a study if they are not being evaluated as part of the investigation. For a detailed description of the disclosure categories, or for more information about ASCO's conflict of interest policy, please refer to the Author Disclosure Declaration and the Disclosures of Potential Conflicts of Interest section in Information for Contributors.
Authors Employment Leadership Consultant Stock Honoraria Research Funds Testimony Other

Gerold Bepler Eli Lilly (A) Eli Lilly (A); Astra Zeneca (A); Genentech (A)
George Simon Eli Lilly (A); Sanofi Aventis (A); Genentech (A); Astra Zeneca (A)

Dollar Amount Codes (A) <$10,000 (B) $10,000-99,999 (C) ≥$100,000 (N/R) Not Required


    Author Contributions
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 

Conception and design: Gerold Bepler, Irina Kusmartseva, Alan Cantor, Anupama Sharma, George Simon

Financial support: Gerold Bepler

Administrative support: Gerold Bepler

Provision of study materials or patients: Gerold Bepler, Irina Kusmartseva, Swati Sharma, Ashish Gautam, Anupama Sharma, George Simon

Collection and assembly of data: Gerold Bepler, Irina Kusmartseva, Swati Sharma

Data analysis and interpretation: Gerold Bepler, Irina Kusmartseva, Swati Sharma, Alan Cantor, Anupama Sharma

Manuscript writing: Gerold Bepler, Irina Kusmartseva, Alan Cantor

Final approval of manuscript: Gerold Bepler, Irina Kusmartseva, Swati Sharma, Ashish Gautam, Alan Cantor, Anupama Sharma, George Simon

 


    GLOSSARY
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 

Annexin V labeling:
Annexin V is used as a probe in an affinity assay to detect cells that have expressed phosphatidylserine on the cell surface.

ERCC1 (excision repair cross-complementing gene):
Encodes a nucleotide excision repair protein that repairs a range of lesions, including UV-induced thymine dimers and other photoproducts, and also lesions caused by a variety of chemical agents.

MTT assay:
A laboratory test that measures cell growth.

RRM1 (ribonucleotide reductase):
A gene that encodes the regulatory subunit of ribonucleotide reductase and is a molecular target of gemcitabine.

RT-PCR (reverse-transcriptase polymerase chain reaction):
PCR is a method that allows logarithmic amplification of short DNA sequences within a longer, double-stranded DNA molecule. Gene expression can be measured after extraction of total RNA and preparation of cDNA by a reverse-transcription step. Thus, RT-PCR enables the detection of PCR products on a real-time basis, making it a sensitive technique for quantitating changes in gene expression.


    NOTES
 
published online ahead of print at www.jco.org on September 11, 2006.

Supported by Grants No. R01 CA102726 and R21 CA106616 from the National Cancer Institute.

Terms in blue are defined in the glossary, found at the end of this article and online at www.jco.org.

Authors' disclosures of potential conflicts of interest and author contributions are found at the end of this article.


    REFERENCES
 TOP
 ABSTRACT
 INTRODUCTION
 PATIENTS AND METHODS
 RESULTS
 DISCUSSION
 Authors' Disclosures of...
 Author Contributions
 GLOSSARY
 REFERENCES
 
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Submitted February 8, 2006; accepted June 23, 2006.




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